PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504369.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 482aa    MW: 54502.2 Da    PI: 5.0939
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34181082101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+ ++e++sws+++nsfvv+d+ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF +++F k++k+ll++
  XP_004504369.1  18 FLLKTYDMVDDSGTDEIVSWSSTNNSFVVWDPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKIHPER---------WEFGNDEFIKDQKHLLKN 103
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_004504369.1 104 IHRRK 108
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.53E-3514107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-3714107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5914107IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDAAPHSSTA ATGGPAPFLL KTYDMVDDSG TDEIVSWSST NNSFVVWDPP EFARVLLPTY  60
FKHNNFSSFI RQLNTYGFRK IHPERWEFGN DEFIKDQKHL LKNIHRRKPI HSHSHPPGSV  120
ADPERAAFEE EIEKLSREKN SLESNLFNYK QNQSTAKLQL EDFQQRLDGM EKRQTNLLSF  180
FEQALQNPSF VEHLSRKIES MDLAAYNKKR RLPQIDHVQP VAEGSLVDNH SNFRLEFGNV  240
FHQDFSNKLR LELSPAVSDM NLVSRSTQGS NEDEESLQKN LSEGELIGMQ TRTDLGFVPE  300
TLELADTGAS FTFNMDSCLS RRAVTTECPK LHSLEPSSEE GDSHISCQLN LTLASCPLEF  360
HRNSYSARSP QIDCQEIGNL AESRFLANGK EFENGVSSTR NVANEVANLA FSQEAPVNNQ  420
VKPAAPHRVN DVFWEQFLTE RPGCSDNEEA ISNYRANPYD EQEGRSAHGI SGNIKNMDNL  480
TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-22110712129Heat shock factor protein 1
5d5v_B7e-22110712129Heat shock factor protein 1
5d5v_D7e-22110712129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504369.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-158HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A1S2YGZ70.0A0A1S2YGZ7_CICAR; heat stress transcription factor A-5
STRINGXP_004504369.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-160HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]