PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504312.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 27257.7 Da PI: 8.174 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 27 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr++ +g+W+AeI+d s+ + r +lg++ taeeAa+a+++a+ l+g XP_004504312.2 27 SKFVGVRQRA-SGKWAAEIKDTSK---NIRMWLGTYKTAEEAARAYDEAACLLRG 77 79*****999.7*********544...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.47E-31 | 27 | 84 | No hit | No description |
Pfam | PF00847 | 5.0E-12 | 27 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-19 | 27 | 86 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.6E-33 | 28 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-27 | 28 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.388 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-7 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-7 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDMEYENKKC NQEDKHKAKL KMKKSGSKFV GVRQRASGKW AAEIKDTSKN IRMWLGTYKT 60 AEEAARAYDE AACLLRGSNT RTNFSTTHST PTNSPISLKL KSLINRKSIK SQSQSQSQPT 120 MMSSPNVNSI IDNNIMVVEN NSSCNSEDSK SLFWIQNQVS EYNPFGVDMN MINSSLGITP 180 NTLQIDYSWP LPQQKINELT TPKDNMNIYG INECYVEDIY ESKYEFDVNY PLSQLFCFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 26 | 84 | 3 | 62 | ATERF1 |
3gcc_A | 1e-15 | 26 | 84 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504312.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504312.2 | 1e-179 | ethylene-responsive transcription factor ERN3 | ||||
Swissprot | A9Y0K9 | 1e-122 | ERN3_MEDTR; Ethylene-responsive transcription factor ERN3 | ||||
TrEMBL | A0A1S2YGV0 | 1e-178 | A0A1S2YGV0_CICAR; ethylene-responsive transcription factor ERN3 | ||||
STRING | XP_004504312.1 | 1e-177 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15646 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-24 | related to AP2 11 |
Publications ? help Back to Top | |||
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