PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504295.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 426aa    MW: 48811.5 Da    PI: 7.7528
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.6e-32104157255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  XP_004504295.1 104 PRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 157
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.739100160IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-30100158IPR009057Homeodomain-like
SuperFamilySSF466891.67E-14102158IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-22104159IPR006447Myb domain, plants
PfamPF002491.0E-8105156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKMSDGSENH ENERSGNKSE EQGEDTSMGS SSHNNKCSIS FDLNEEASSD EDKINNKNNN  60
NNNEACDDEK NEKDDDEEGT SSSTKNRSSE RRNGVRQYVR SKMPRLRWTP DLHHSFVHAV  120
ERLGGQERAT PKLVLQLMNV RGLSIAHVKS HLQMYRSKKL DESGQVLSPT HRSTYELGRI  180
SHVPHQSMIP HQHFKMANGG IILETNYNHH NYNFHSLLHP SSLSHSHSKT INPRHNQWYL  240
NQSSRPSYIS NEIISSTALH TQGRSIANSN QLQLMDTTTT TTTLAPMRPS QFLEEKRWPP  300
LDIFNNHHWR KNLHTNVSTN TTGPQSFAYH QFGSATSTSL RPNEVSFGNN TRINRENLSS  360
INEHHNYFHN SKLEFDPPFR IKLDEETLHK DKKWVPDLQL SLSQTNDKND GKSDGFREIN  420
TKLSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-18105159458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397461e-46AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence.
GenBankAC1654311e-46AC165431.9 Medicago truncatula clone mth2-117b21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504295.10.0transcription factor HRS1-like isoform X1
TrEMBLA0A1S2YG360.0A0A1S2YG36_CICAR; transcription factor HRS1-like isoform X1
STRINGXP_004504295.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-38G2-like family protein