PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 148aa MW: 16563 Da PI: 8.869 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 37.3 | 3.8e-12 | 6 | 33 | 7 | 34 |
GATA 7 tkTplWRrgpdgnktLCnaCGlyyrkkg 34 + TplWR+gp ++ LCnaCG +yr+ g XP_004504176.1 6 SATPLWRQGPAEKPVLCNACGSRYRHWG 33 56********99999**********866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 8.51 | 1 | 33 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.0083 | 4 | 44 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.2E-10 | 6 | 33 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.6E-9 | 6 | 32 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 3.9E-7 | 6 | 38 | No hit | No description |
CDD | cd00202 | 2.75E-9 | 8 | 34 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDSSSSATPL WRQGPAEKPV LCNACGSRYR HWGTLDNYLP KHSIGKDLVV PHPIICTNNL 60 LFNFLGESSS SLWASTIPSK KRTRRGVYKR LTPMERFQKQ LLDELKLQGI PNEPSPEEVL 120 LFQNVNSFIP SNEIGLGGIL LERDGTSI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504176.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027191885.1 | 6e-98 | GATA transcription factor 26-like | ||||
TrEMBL | A0A3Q7YGA2 | 1e-96 | A0A3Q7YGA2_CICAR; GATA transcription factor 26-like | ||||
STRING | XP_004504176.1 | 1e-106 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12747 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.2 | 7e-14 | GATA transcription factor 26 |