PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004504082.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 283aa MW: 32106.8 Da PI: 9.7003

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004504082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	107	128	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r n++ H+r+H XP_004504082.1 107 FCEICGKGFTRDANMRMHMRSH 128 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.25E-5	105	129	No hit	No description
PROSITE profile	PS50157	11.323	106	128	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0013	106	128	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	6.3E-5	107	128	No hit	No description
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.1E-6	108	128	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	41	154	187	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	180	192	213	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.8E-4	206	239	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MHNHTETQQI KSNNLIIPLH NLSKLNTQID SLKHFIFQSI NTNTLLSKHH LDTLSNQLSS 60 SIRHVITNAS ALLAASPVTV TVSPTVNEHS ETVELNAVEL LAKHFHFCEI CGKGFTRDAN 120 MRMHMRSHGE RFKTREALRG GCGVREARLT ATRFSCPFEG CKRNKLHKKF MPLKSVLCLR 180 NHFKRSHCPK THTCDRCKRK SFAVISDLKS HVKQCGGEST WKCTCGTTFS RKEKLFGHVA 240 RFEGHSPAVE VGEEEKRKTM EAAPAEGDRL PEGFFDDLEK FWV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004504082.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004504082.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	3e-63	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A1S2YFK6	0.0	A0A1S2YFK6_CICAR; zinc finger protein STOP1 homolog
STRING	XP_004504082.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6855	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	1e-64	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]