PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004504035.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 363aa MW: 41395.1 Da PI: 5.3199

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004504035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.6e-11	76	110	4	38
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 +k +rr+++NReAAr+sR++Kka++++Le +L XP_004504035.1 76 DKMQRRLAQNREAARKSRLKKKAYVQQLESCRLKL 110 799*************************9854444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.8E-6	73	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.657	75	117	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.4E-8	76	114	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-6	77	122	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.7E-8	77	122	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.1E-27	166	240	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDSSSSQYVS TSIGVYDPIH QFAIWEEHFK NNGDLSASMS LIEEANMKLN NQSEDACFGI 60 LGTSTKYDQE ANKLTDKMQR RLAQNREAAR KSRLKKKAYV QQLESCRLKL VQLEQELDRT 120 RQQQEGLYVA GGLCSNNLGF EGSVNSEITT FKMEYGNWVE EQNRQILELK TALSAHISDI 180 QLEPIVNGTM NHYFKLFCMK SAAAQVDVFY VINGMWNTTA ERFFLWIGGF RPSELLKVLV 240 PLIEPLTEEQ RFDASNLEQS CRQAEDALSQ GMEKLQGMLA DTVVAGQLIE GIYIPQMAVA 300 IERLEALASF VNQADHLRQE TLQQMSRILT IRQTARWLLA LGEYFQRLRA LSTLWTNRPR 360 EPA

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDSSSSQYVS TSIGVYDPIH QFAIWEEHFK NNGDLSASMS LIEEANMKLN NQSEDACFGI  60
LGTSTKYDQE ANKLTDKMQR RLAQNREAAR KSRLKKKAYV QQLESCRLKL VQLEQELDRT  120
RQQQEGLYVA GGLCSNNLGF EGSVNSEITT FKMEYGNWVE EQNRQILELK TALSAHISDI  180
QLEPIVNGTM NHYFKLFCMK SAAAQVDVFY VINGMWNTTA ERFFLWIGGF RPSELLKVLV  240
PLIEPLTEEQ RFDASNLEQS CRQAEDALSQ GMEKLQGMLA DTVVAGQLIE GIYIPQMAVA  300
IERLEALASF VNQADHLRQE TLQQMSRILT IRQTARWLLA LGEYFQRLRA LSTLWTNRPR  360
EPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004504035.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT140750	0.0	BT140750.1 Medicago truncatula clone JCVI-FLMt-5N7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004504035.1	0.0	transcription factor TGA4-like isoform X1
Refseq	XP_004504036.1	0.0	transcription factor TGA4-like isoform X1
Swissprot	Q39162	1e-167	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A1S2YGI1	0.0	A0A1S2YGI1_CICAR; transcription factor TGA4-like isoform X1
STRING	XP_004504035.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-170	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]