PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 816aa MW: 90714.2 Da PI: 8.5974 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.1e-06 | 147 | 167 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa G C++G+ C+F H XP_004503948.1 147 PCRDFAV-GNCRRGSHCHFLHH 167 8******.*************6 PP | |||||||
2 | zf-CCCH | 17.9 | 5.4e-06 | 270 | 291 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ G C+F+H+ XP_004503948.1 270 TPCK-FFAFGNCRNGKDCRFSHD 291 5899.8888*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.333 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-4 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-5 | 146 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.174 | 201 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.05 | 202 | 227 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.6E-4 | 266 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-5 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MSGSCRKLSS KWDSGDESEF ASESVTNSNN SRRPYLASND MIKPRMEFLS KEPFSGGRGS 60 NRDDVRNEDY RVFDATIAQG TDGSYDMDIS PGFEEWKNRK HGQSAKDDYG SAMSRRSRSH 120 SRSPPRGFKY SAVDERNRTR AGRTAQPCRD FAVGNCRRGS HCHFLHHDNQ SYEDSRESRH 180 RQDGPRYSNS RESGDYSLAS QRSNEACINF AKGRCRTGES CKYVHHGNSD GFDNKVSADE 240 SSRQREIDRR RSDNSFKQGG QHYPNHSGNT PCKFFAFGNC RNGKDCRFSH DRQAFTSPIG 300 RLRDDRSRSN QGEDQVLGRP KISDSVIPNG RPRDDRWGSD GSMADVGKVW DGPKQNDLVA 360 VSDTAKMVED NKNGIIGAAE PGFIAWPMSD RRDHSFDKNI VHNESPFSID KKEGNCSKAE 420 NATDNILISQ SVGGGIWPGD ETMSPDWNYG ARSSSHVNDE HGQNKQQVAP GQGLIQNSQN 480 ISASQVVGQS QTTVSIVTPR ARIIESIQNQ EHSTEKNYIV EPNTMNASLS QISSRNTPTQ 540 NVVSKEQLAQ LSCLSASLAH ILGTDQKLPQ LHSTSNSYDA KDTLFGSKIE GSGDPVSLTF 600 IKPDPAIGLK QYDTMCDSMG PKNTNASVVP PTFSPIKIPK NAVEIPPQLS NLGQSFDDSR 660 KTAISEEPHV KNEHLFHLQL CENIKVQNET SKIVAEEKPS SQSENKITKE NSPLGNMDQN 720 VGPEDAKKTK DAKGTRAFKI SLVELIKELL KPTWKDGKIT KEDYKAIVKK VTDKVTGTVQ 780 RVHIPQTQEK IDRYLSVSKP KLIKLVQAYV EKAQKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503948.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503948.1 | 0.0 | zinc finger CCCH domain-containing protein 55 isoform X1 | ||||
TrEMBL | A0A1S2YF95 | 0.0 | A0A1S2YF95_CICAR; zinc finger CCCH domain-containing protein 55 isoform X1 | ||||
STRING | XP_004503947.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4099 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-13 | C3H family protein |