PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503863.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 293aa    MW: 32477.6 Da    PI: 9.0035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l ++++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_004503863.1 14 KGAWSKEEDDRLTNYINIHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.46.6e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel++ +++ lG++ W+ Ia++++ gRt++++k++w+++
   XP_004503863.1  67 RGNFTPQEDELIISLHTFLGNK-WSQIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.733961IPR017930Myb domain
SuperFamilySSF466891.39E-2813108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002492.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221568IPR009057Homeodomain-like
CDDcd001671.76E-101661No hitNo description
PROSITE profilePS5129426.64762116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1567111IPR001005SANT/Myb domain
CDDcd001673.23E-1269112No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2869116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRSPCCEKD HTNKGAWSKE EDDRLTNYIN IHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TPQEDELIIS LHTFLGNKWS QIAARLPGRT DNEIKNYWNT HIKRKLFTRG  120
IDPSTHKPLN GGSAAVVASS QPELPVVPTS NESSSSSSKK KKNNNKSEFE LFSNNNMNRE  180
KVVVTDSGCV EESVSNSSSG VTIEEIAPYP PHINLELSLA PPSQQQQISL YSWQGGVCLC  240
RHALGLHGNN HQLPCSCKKP ITHPHGTPSA TIQQPAPTGN DVFKFFGAGN FKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141187110B-MYB
1h8a_C2e-261311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503863.10.0myb-related protein 308-like
SwissprotP813932e-86MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1S2YF200.0A0A1S2YF20_CICAR; myb-related protein 308-like
STRINGXP_004503862.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-82myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]