PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 354aa MW: 39898.7 Da PI: 5.5861 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.1 | 7.3e-21 | 43 | 136 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Liea++ +e+ + + p+W+ vs+ ++++g++r+++qC+++w nl ++y+kik++e++ ++e++s + + +++ XP_004503841.1 43 RWTRQETLVLIEAKKVVENGDQVCRyrsstsglvHTDPKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDYRKIKKWESNIKDENESFWIMRNDV 136 8**************999987743233446777799********************************************99999888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0062 | 40 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.8E-12 | 42 | 130 | No hit | No description |
PROSITE profile | PS50090 | 6.609 | 43 | 109 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 43 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MCEPNSEKIC EGSAESPTTP VGRQPTEAEP KSSERIKATR HPRWTRQETL VLIEAKKVVE 60 NGDQVCRYRS STSGLVHTDP KWDLVSSLCQ QHGVKRGAVQ CRKRWGNLLT DYRKIKKWES 120 NIKDENESFW IMRNDVRKEN KLPGFFDSVV YNVLDGGVCT AAAFPLTLIK MAPREENGDQ 180 VEMPVAALED ENEEDEDEAT VDCEKMGWST EEENIETNTN GNMVSNSPFK TPNVMKTNIR 240 GSFNIIPLIT VPNSAERQQQ PSCQGTYGQG FQREPLLNEG YKRKRLSPDN SEDTDFNDNV 300 IKVLRRNSNI LKAHLGAQNI NSQLARDQQK QQTDSLVAAL GKLTDALTKI ADKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503841.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126794 | 0.0 | AC126794.15 Medicago truncatula chromosome 4 clone mth2-24j7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503841.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1S2YEZ5 | 0.0 | A0A1S2YEZ5_CICAR; trihelix transcription factor ASR3-like | ||||
STRING | XP_004503841.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 5e-52 | Trihelix family protein |