PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503553.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1120aa    MW: 123756 Da    PI: 6.889
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23140241199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++  ++l+ +d++g++W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++
  XP_004503553.1 140 FCKQLTASDTSTHGGFSVPRRAAEKIfppldfS-VQPPAQELVARDLHGKVWKFRHIYRGQPKRHLLTTGWSLFISGKKLLAGDSVLFI--RDEK 231
                     99*****************************73.3344459************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_004503553.1 232 QQLLLGIRRA 241
                     889****997 PP
2Auxin_resp1193.7e-39266349183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ +a++ +++s+GmRf+m+feteds +rr++Gtv+gvsdld+vrW+nS+Wr+L+
  XP_004503553.1 266 AAHAAANSSPFTVFYNPRASPSEFVIPLAKYYRAVYsHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQ 349
                     79********************************9889********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-42130269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-40131255IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-19139231No hitNo description
PROSITE profilePS5086312.548140242IPR003340B3 DNA binding domain
SMARTSM010192.0E-23140242IPR003340B3 DNA binding domain
PfamPF023622.4E-21140241IPR003340B3 DNA binding domain
PfamPF065072.8E-34266349IPR010525Auxin response factor
PfamPF023092.7E-610061093IPR033389AUX/IAA domain
PROSITE profilePS5174527.08410081092IPR000270PB1 domain
SuperFamilySSF542775.23E-610211085No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MATLNKEAVT ATTTSTATAA VAAAHEGEEK NGINQELWQA CAGPLVNLPL AGTHVVYFPQ  60
GHSEQVAASL KKDGDAQIPN YSNLPSNLPC LLHSLTLHAD LETDEVYARM TLQPVSSFDM  120
DALLRSDISL KSSKPQPEFF CKQLTASDTS THGGFSVPRR AAEKIFPPLD FSVQPPAQEL  180
VARDLHGKVW KFRHIYRGQP KRHLLTTGWS LFISGKKLLA GDSVLFIRDE KQQLLLGIRR  240
ANRQPTHLSS SVLSSDSMHI GILAAAAHAA ANSSPFTVFY NPRASPSEFV IPLAKYYRAV  300
YSHQISPGMR FRMMFETEDS GTRRYMGTVI GVSDLDSVRW KNSQWRNLQV GWDESAAGER  360
RSRVSIWEIE PATAPFFICP PPFFRSKRPR QPGMLDDEPF DFSNVFKSTM PWLGDDMSIK  420
DPQGFHGLSL AQWMNIQQNP ARSSSLQPNH VSSMSGSVLQ NHPGADIAHQ LGFSNQQISQ  480
SNNVNAPGIH QNSQQLDHLQ KLPFTSSGLG TAMQPEQQLC NVSQYPRQNM ANQTLPQSQV  540
QTQLLNPPSI VQSNNILQPQ QPSIQNHQLH RSLSQNPPQQ LQQTIMSQNQ QQNMIQHTIP  600
DHINQQFHMS DNQVRLQLLQ KLQQQQQTFL AQQSALQQPA QLIQNQDQQR QLLDATQNSR  660
TVTPSQVLEI PPSLQNSLPE ANSMIHQMAT PSSQNNIQFS HPSQQPKLQY QQQHTQPGLL  720
SKMSSRVGLP PATTINQLSA NGCSIRTVAT ATAPSVITDD VPSCSTSPST NNCASALPPV  780
TTTQILRSTI GDDMAQSAVT ILSQNALETM SSNANVVKYV QPKYEVKPSL NMSENRNQGN  840
FYPQACLNGG AVQTDCLDTS SSTASVCLSQ SDTHFHQNDS QLPYNPQSMF CRDNIQNVEV  900
QADARCNVAY GNGNEQMRMP LNLDSPVTKG TTRSGKDLSN NFSSGGLLGG YENNSGAQPE  960
LSSSMVSHSF ELPDMTFNSI DSTVNDSSFL NTGPWAPPPP PQQFQRMRTY TKVYKRGAVG  1020
RSIDITRYSG YEELKHDLAR RFGIEGQLED RQRIGWKLVY VDHENDVLLV GDDPWEEFVI  1080
CVRCIKILSP QEVQQMSIDG DFGNGGLPKQ AGSSSDGGNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592737045388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503553.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400230.0AC140023.13 Medicago truncatula clone mth2-32h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503553.10.0auxin response factor 19 isoform X2
TrEMBLA0A1S2YF560.0A0A1S2YF56_CICAR; Auxin response factor
STRINGXP_004503551.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19