PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004503507.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 440aa MW: 49738.4 Da PI: 6.951

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004503507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.1	1.5e-35	47	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 lp+G++F+Ptd+el+ e+L++kve+k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_004503507.1 47 LPAGVKFDPTDQELI-EHLEAKVESKNnikshplIDEFILtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqteecdiq 139 799**********.99***9987776554443444877757******.555666799**************8788888888 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_004503507.1 140 gntGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 194 77433778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-38	43	213	IPR003441	NAC domain
PROSITE profile	PS51005	32.434	47	213	IPR003441	NAC domain
Pfam	PF02365	4.8E-16	48	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MMNKMSNVTC SDLIDAKLEE HQLCGSKQCP GCGHKFDQGG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVES KNNIKSHPLI DEFILTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTEECDIQG NTGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR 180 KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSDHKSVTNI NGEAIEGRRD 240 SGSGSCSNSS KEIVHHINHN HRDEMSAVPT PLTNFTSSLD IQHLKNDHFG FIPFRKSFDE 300 VGIGESCRGR EIQQASGRCD EHEHEQINAT TSFHMSRPSN PISTIISPPP LHHTSIILDD 360 NSYHVSTIML QNDHFQQQQQ QHKIGGSGRS ASCLEEVIMG CTSSSSDIKE EASITNTQEA 420 EWLKYSSYWP VDPHNPNHQS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MMNKMSNVTC SDLIDAKLEE HQLCGSKQCP GCGHKFDQGG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVES KNNIKSHPLI DEFILTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTEECDIQG NTGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR  180
KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSDHKSVTNI NGEAIEGRRD  240
SGSGSCSNSS KEIVHHINHN HRDEMSAVPT PLTNFTSSLD IQHLKNDHFG FIPFRKSFDE  300
VGIGESCRGR EIQQASGRCD EHEHEQINAT TSFHMSRPSN PISTIISPPP LHHTSIILDD  360
NSYHVSTIML QNDHFQQQQQ QHKIGGSGRS ASCLEEVIMG CTSSSSDIKE EASITNTQEA  420
EWLKYSSYWP VDPHNPNHQS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004503507.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC162439	1e-132	AC162439.20 Medicago truncatula clone mth2-175g14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572103.1	0.0	NAC domain-containing protein 75 isoform X1
Refseq	XP_012572104.1	0.0	NAC domain-containing protein 75 isoform X1
Swissprot	Q9M0F8	1e-171	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1S2YE65	0.0	A0A1S2YE65_CICAR; NAC domain-containing protein 75 isoform X1
STRING	XP_004503503.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-162	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]