PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | CPP | ||||||||
Protein Properties | Length: 561aa MW: 60221.8 Da PI: 6.7338 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46 | 1e-14 | 89 | 127 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+skClk+YCeCfa+g +C+ C+C +C+N+ + XP_004503448.1 89 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVD 127 89**************************.********986 PP | |||||||
2 | TCR | 51 | 2.9e-16 | 173 | 212 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_004503448.1 173 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 212 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.6E-17 | 88 | 128 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.918 | 89 | 213 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.8E-11 | 90 | 125 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 173 | 214 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 176 | 211 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MGEDEGSDCP PQNAPLDAVS TATPKKLARQ LDFNAFPGGI PVTSPLPEQT QPPLTTTLPS 60 LPSAKFVKPE SPKSKTRPNF ETKDVTPKKQ KQCNCKHSKC LKLYCECFAS GIYCDGCNCV 120 NCFNNVDNEA ARREAVEATL ERNPNAFRPK IASSPHGTRD SKEEAGEVLI LGKHNKGCHC 180 KKSGCLKKYC ECFQANILCS ENCKCMDCKN FEGSDERQAL FHGDQNNNMA YIQQAANAAI 240 TGAIGSSGYS SPPVSRKRKG PELWPSIKDP SVGKLAQQAN LVRSPAAPSS SLSPIPGARV 300 GPSTLGPSKF MYRSLLADII QPQHLMELCT VLVLASGQAT KTLADQKNLM DKHTEDQTET 360 SLASSNQAQL PNQMEADVEK ATADDCSSAN QTDKTSPENS SSDGGDVPKG RPMSPGTLAL 420 MCDEQDTMFM TSAPSIGSMG HACNTSSQLP YGRGATEVYA EQERIVLTKL RDFLNRVITM 480 GEINETKCSS LARSELEIQK DPIINSTENA STEAVHQQGL GATSNGIAKA VANTTNTITS 540 TSLVPCSFVP ENGETKPKVE K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-31 | 90 | 222 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 7e-31 | 90 | 222 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503448.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-108 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503448.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1S2YE17 | 0.0 | A0A1S2YE17_CICAR; protein tesmin/TSO1-like CXC 5 | ||||
STRING | XP_004503448.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-168 | Tesmin/TSO1-like CXC domain-containing protein |