PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004503367.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 471aa MW: 52521.8 Da PI: 6.1078

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004503367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+k+F++ ++ H ++ XP_004503367.1 116 YECPICKKPFRSEDEVSEHVDNC 138 99*************99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	4.8E-11	25	52	No hit	No description
CDD	cd09212	2.44E-20	176	261	No hit	No description
SuperFamily	SSF143503	4.58E-18	179	262	IPR018997	PUB domain
Pfam	PF09409	3.3E-16	182	250	IPR018997	PUB domain
SMART	SM00580	1.1E-15	182	249	IPR018997	PUB domain
SuperFamily	SSF54236	7.23E-12	333	444	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	4.8E-11	348	442	No hit	No description
PROSITE profile	PS50033	10.249	360	444	IPR001012	UBX domain
Pfam	PF00789	3.7E-5	362	410	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MDDVKDKVKG LMKKVNNPFS SSTSGKFKGQ GRVLGSSSSS SSSYTPSNSN PTPRPNPSPS 60 QNPNPNSKPK PKPTSPVASD NSRIDKARKP GDGFDPFDSL VTSSQRSQNG YSLNVYECPI 120 CKKPFRSEDE VSEHVDNCLS NPTESIDGDE NCVSELQESE VESNTELEIF IGTYVSGKPS 180 EGSIDVVLKL LRNIVREPEN VKFRKIRMNN PKIKEAIADV IGGVELLSFL GFELKEENGE 240 TWALMEAPRE EEKINFIKKA IVLLEPQLVV QDPPKRDNLT STASVEKVVT AEPKKIDRQV 300 KVFFAVTESV AAKIELPDSF YKLSVDEARR DAELRRKRIE ESQLLIPKSL KEKQAKAARR 360 RYTRTIIRIQ FPDGVVLQGV FAPWEPTTAL YEFVSSALKE QGLEFELMHP IVVQRRVIPC 420 FPKAGQKVKT IEEEDLVPSA LIKFKPLETD SVVFTGLKNE LLEISEPLVN G

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MDDVKDKVKG LMKKVNNPFS SSTSGKFKGQ GRVLGSSSSS SSSYTPSNSN PTPRPNPSPS  60
QNPNPNSKPK PKPTSPVASD NSRIDKARKP GDGFDPFDSL VTSSQRSQNG YSLNVYECPI  120
CKKPFRSEDE VSEHVDNCLS NPTESIDGDE NCVSELQESE VESNTELEIF IGTYVSGKPS  180
EGSIDVVLKL LRNIVREPEN VKFRKIRMNN PKIKEAIADV IGGVELLSFL GFELKEENGE  240
TWALMEAPRE EEKINFIKKA IVLLEPQLVV QDPPKRDNLT STASVEKVVT AEPKKIDRQV  300
KVFFAVTESV AAKIELPDSF YKLSVDEARR DAELRRKRIE ESQLLIPKSL KEKQAKAARR  360
RYTRTIIRIQ FPDGVVLQGV FAPWEPTTAL YEFVSSALKE QGLEFELMHP IVVQRRVIPC  420
FPKAGQKVKT IEEEDLVPSA LIKFKPLETD SVVFTGLKNE LLEISEPLVN G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	1e-13	311	444	19	146	Tether containing UBX domain for GLUT4
5ifs_C	1e-13	311	444	19	146	Tether containing UBX domain for GLUT4
5ifw_A	7e-14	311	444	19	146	Tether containing UBX domain for GLUT4
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Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004503367.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC150979	1e-116	AC150979.15 Medicago truncatula clone mth2-115a17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004503367.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A1S2YDV4	0.0	A0A1S2YDV4_CICAR; plant UBX domain-containing protein 2
STRING	XP_004503367.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]