PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GeBP | ||||||||
Protein Properties | Length: 399aa MW: 44780 Da PI: 5.4358 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 95.4 | 5.7e-30 | 176 | 269 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 k+fqrl+se+De+v+Lq+l+df+aktg +p ++++ fyefvkk i+++v+ ql KirrLK+Kf++kvk gk p+ +k+ + k+fel ki XP_004503229.1 176 KYFQRLFSEDDELVILQALVDFTAKTGNDPCKHLTVFYEFVKKLIHVEVTIGQLRYKIRRLKQKFHNKVKS---GKPPTSAKPIEIKAFELGLKI 267 68******************************************************************999...********************* PP DUF573 96 Wg 97 Wg XP_004503229.1 268 WG 269 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.8E-24 | 178 | 269 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MAKKRHISQL DEPPIPASKD DHKPPQQEHI TDDQEEEEGS TSSQAASSSE QVEEHEEEED 60 DDEEEDIQQT PSQPASKNHP PPSSNSHPKS SSSSEETDSE SESDPEPNTK LKPLPSKPIK 120 SKPQAQASPP PTKSGTKRPI NNDAKQLNKK KKTTAADEDD KEPEDDVTKT GEDSKKYFQR 180 LFSEDDELVI LQALVDFTAK TGNDPCKHLT VFYEFVKKLI HVEVTIGQLR YKIRRLKQKF 240 HNKVKSGKPP TSAKPIEIKA FELGLKIWGD KPNRKSLKKE PAAKKPTTTK KLVMEPDSPL 300 VVLNESKKAE ESSGKIDASD ANLILNEMVR FDRSAGFTGL NLDAINKAVV LLDESQRDEF 360 EGRWKKLHIA ELELFTRRAE LVEEQTCLIL DALRSSLSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503229.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503229.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | A0A1S2YDH5 | 0.0 | A0A1S2YDH5_CICAR; GLABROUS1 enhancer-binding protein-like | ||||
STRING | XP_004503229.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 8e-28 | DNA-binding storekeeper protein-related transcriptional regulator |