PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 26550.2 Da PI: 9.7837 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H XP_004503164.1 60 YSCHFCKREFRSAQALGGHMNVH 82 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.011 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEESQDLMWM MKRKQNFKSP IEAVPYGIGA INSNNSWEEK AFAEDAARIL GGCIWPPRSY 60 SCHFCKREFR SAQALGGHMN VHRRDRARLK HHHNEEDLHS HHKNHFTTTS RVSSSWPSTI 120 CTQENCFQPN MSTYSTSIRK GNHMDFLKGV ANERKQIFKG LNKNNFVETS LSMGQKLAYG 180 DKAITYKRTK TSSLPCLNER CLSVKSAEFV IGIKPGIEDL DLELRLGKTQ KV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 55 | 82 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 55 | 82 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503164.1 | 1e-177 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A1S2YDD3 | 1e-176 | A0A1S2YDD3_CICAR; probable transcriptional regulator RABBIT EARS | ||||
STRING | XP_004503164.1 | 1e-177 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 3e-26 | zinc-finger protein 10 |