PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503115.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 231aa    MW: 25672.4 Da    PI: 6.3698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002782104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ F ++  L  H++ H
  XP_004503115.1  82 FSCNYCHRKFYSSQALGGHQNAH 104
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-680109No hitNo description
PROSITE profilePS5015711.15782109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKPKFDLEVE ASAEYESEAS SQVETSPEEP HNHSEPISLD LTLNFNNNDL VVKDSTGFSF  60
SSTSGSSNEL ASQTTTTIPR VFSCNYCHRK FYSSQALGGH QNAHKRERIL AKRAMRIGLF  120
NERYASLASL PLNGSFRSLG IKTHSSLHHG FSPPTILRPN PEIKSNVRIK QGYIGHSIFA  180
EDEEAELLWQ GSFHHEGAGN THQSSNLCYN EVDVKPLVDI ENSAPELTLK L
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503115.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503111.11e-172zinc finger protein 4-like isoform X1
RefseqXP_004503113.11e-172zinc finger protein 4-like isoform X1
RefseqXP_004503114.11e-172zinc finger protein 4-like isoform X1
RefseqXP_004503115.11e-172zinc finger protein 4-like isoform X1
RefseqXP_027191195.11e-172zinc finger protein 4-like isoform X1
SwissprotQ392633e-42ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A1S2YEK21e-170A0A1S2YEK2_CICAR; zinc finger protein 4-like isoform X1
STRINGXP_004503111.11e-171(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-44zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]