PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503065.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 266aa    MW: 29676.9 Da    PI: 9.4094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-17954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l+++v+q+G+ +W+ I++ +  gR++k+c++rw++ 
   XP_004503065.1  9 RGHWQPAEDQKLKQLVNQYGPQNWNFISQQLE-GRSGKSCRLRWYNQ 54
                     899*****************************.************96 PP
2Myb_DNA-binding46.58.8e-1561103145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++++ eE++ll+ ++k  G++ W++Iar+++ gRt++ +k++++
   XP_004503065.1  61 KNPFSDEEEDLLLSLHKVKGNK-WAAIARYFP-GRTDNAVKNHFH 103
                      689*******************.*********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9459IPR017930Myb domain
SuperFamilySSF466892.72E-298102IPR009057Homeodomain-like
SMARTSM007171.1E-14857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-251062IPR009057Homeodomain-like
CDDcd001672.78E-131253No hitNo description
PfamPF139211.9E-161269No hitNo description
SMARTSM007172.1E-1260108IPR001005SANT/Myb domain
PROSITE profilePS5129414.39160110IPR017930Myb domain
CDDcd001671.62E-1063103No hitNo description
Gene3DG3DSA:1.10.10.601.8E-1863108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRSKSCNRG HWQPAEDQKL KQLVNQYGPQ NWNFISQQLE GRSGKSCRLR WYNQLNPNII  60
KNPFSDEEED LLLSLHKVKG NKWAAIARYF PGRTDNAVKN HFHILTARRN RERFSLYDAD  120
TILSYDNSSN SHNNFNLGNY GKKTGTLFGM SYSSSSNITS SSFDAFGVNA NYNKAEKESK  180
VVYSSILGSY HSFTAPGLPC IGKVVSLQHK FISNSIKTGK YSCEEQEQSE KCVNDVKQKG  240
VSFIDFLGVG SSSSSSAHDD TIGGGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-3291097107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503065.10.0transcription factor MYB54
TrEMBLA0A1S2YD290.0A0A1S2YD29_CICAR; transcription factor MYB54
STRINGXP_004503065.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.13e-55myb domain protein 69