PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503043.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 263aa    MW: 29832.2 Da    PI: 6.1603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.7e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd +l+++ ++ G+g +W + +++ g++R++k+c++rw++yl
   XP_004503043.1 14 RGPWSHEEDIILKNYLEKNGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding40.75.4e-1371111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+eEd ++  +    G++ W++Ia+ ++ gRt++++k++w++
   XP_004503043.1  71 FTEEEDNIISTLYGTIGSR-WSLIAAQLP-GRTDNDVKNHWNT 111
                      9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75962IPR017930Myb domain
SuperFamilySSF466892.36E-2612109IPR009057Homeodomain-like
SMARTSM007173.4E-101364IPR001005SANT/Myb domain
PfamPF002496.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-201568IPR009057Homeodomain-like
CDDcd001679.07E-71662No hitNo description
PROSITE profilePS5129419.17963117IPR017930Myb domain
SMARTSM007172.0E-1167115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2169116IPR009057Homeodomain-like
PfamPF002491.6E-1170111IPR001005SANT/Myb domain
CDDcd001674.17E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSHE EDIILKNYLE KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPHIKLGG FTEEEDNIIS TLYGTIGSRW SLIAAQLPGR TDNDVKNHWN TKLKKKFLAQ  120
YSSNIATNNN NYTNSSTSTS FDHFSTLTFQ PQINEPFIYD QKINLASFDD SNKVLDLEQT  180
QIHNSLPMTM ESEAFYSGSS LSSSCNTPTT KEISTISISN ARFVEEQNNI HSQWFEYDND  240
DSILLEFALD DILNQDKVAH SSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503043.10.0transcription factor MYB36-like
TrEMBLA0A1S2YD210.0A0A1S2YD21_CICAR; transcription factor MYB36-like
STRINGXP_004503043.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-69myb domain protein 36