PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004502920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 854aa MW: 94615.5 Da PI: 9.3122 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.2e-06 | 163 | 185 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+f + G C++G+ C+F H+ XP_004502920.1 163 TQPCRDFPA-GKCRRGSLCNFLHD 185 789******.*************7 PP | |||||||
2 | zf-CCCH | 21.5 | 4.1e-07 | 224 | 245 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H+ XP_004502920.1 224 EACINFAK-GRCRMGASCKFVHD 245 78******.*************7 PP | |||||||
3 | zf-CCCH | 20.6 | 8e-07 | 289 | 309 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa G C+ G C+FaH+ XP_004502920.1 289 PCKFFAN-GNCRNGKYCRFAHD 309 8**8888.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.037 | 160 | 187 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 160 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 163 | 186 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-4 | 163 | 185 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 220 | 247 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-4 | 221 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-5 | 224 | 246 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 224 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-5 | 284 | 310 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.535 | 284 | 311 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 286 | 309 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 289 | 314 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 289 | 309 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 854 aa Download sequence Send to blast |
MSGTDRKRSS KWDLGDELEF SPGSKQMRPG WSSADVAGRN SSKRAYSQGN DKLRPVMGFS 60 SKEFSGGRGS NKDGDLNKDH RVVDTRREWD TDGNYSKKMS PWPEERKQQR HSQSPNNGWS 120 RSSRSRSRSP PRGFRSSRSR SPRGFRWDSG VDDRKRMRVG GSTQPCRDFP AGKCRRGSLC 180 NFLHDDNQNH DNSWESKHWE DGAPRYSAPH ESVDHSLKSG RSNEACINFA KGRCRMGASC 240 KFVHDDDSDG YGKVSMDEFT REREINRRHR DSSFEQGGGH APNRTSDTPC KFFANGNCRN 300 GKYCRFAHDK QACRSPNRRL RDDRRASNPS GDRQMLDRRK SSNSISPDRR LKDDKRGLDG 360 DVADPDIVGD SPKQNDTVSV TDTAKLIENK SGNVGATERG STAWPMTDGW DHGLDKSRLH 420 GKPSISSDKK EADRWIAENT GANMHGSQPI GTDIWPGDAE MSPDWNYRMG SSSHMEEPGQ 480 NKHGISQGGT YLSTSEHSKI QVAPGQGINQ ITQNVNPLHT SSSHAIGQSQ VAVPILPSRE 540 GIVDAMHSQE VCTEKKYTME PNIMDPGLSH VSSRNPSTQN EVSNEQLAQL TNLSASLAHI 600 LGAGQQLPQL YAALNSHDLK DSPSLAKTQV PAIPVSIACF KPDPAVGLPK PYDPMHDSIE 660 QKNADASGVL PAIPQSKNIA EVETLSQLSK SGRQNCGDSI KAASSEFVKS DNLIQLQPGQ 720 NTVVNKDNNE EVAKERQSSQ DGHHKSTKEN GPQNMDQNGG PDDANKAKDM KGIRAFKFAL 780 AEFVKELLKP TWKEGQITKE DYKTIVKKVV DKVTGTMQGA NIPQTQEKID HYLSFSKPKL 840 NKLVQAYVEK VQKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004502920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502920.1 | 0.0 | zinc finger CCCH domain-containing protein 38-like | ||||
Refseq | XP_012571935.1 | 0.0 | zinc finger CCCH domain-containing protein 38-like | ||||
Refseq | XP_012571936.1 | 0.0 | zinc finger CCCH domain-containing protein 38-like | ||||
Refseq | XP_027190231.1 | 0.0 | zinc finger CCCH domain-containing protein 38-like | ||||
TrEMBL | A0A1S3EAC7 | 0.0 | A0A1S3EAC7_CICAR; zinc finger CCCH domain-containing protein 38-like | ||||
STRING | XP_004502920.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4099 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 9e-12 | C3H family protein |