PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004502831.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 319aa MW: 35706.6 Da PI: 6.4057

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004502831.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	118	174	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK ++ eLe+k+ +L++e ++L +l+ + + l + XP_004502831.1 118 KRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQRDTSGLST 174 9******************************************99988776666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-15	114	178	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.117	116	179	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-10	118	172	No hit	No description
Pfam	PF00170	1.4E-8	118	175	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-10	118	170	No hit	No description
CDD	cd14703	1.26E-21	119	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MSFPFHRRSQ SEVHFRIPDD FDLEMDPFDF DASPLHFQDP PPHDDLLSSY IDSDNSGSKL 60 LSPSAKSGNA DDTTNTGRPA HRRSNSADTS SSLLSEGIES KKAMSPDKLA QLWTVDPKRA 120 KRILANRQSA ARSKERKACY VVELERKIHT LQTEATTLSA QLNLFQRDTS GLSTENTELK 180 LRLQAMEQQA KLCDALNEAL KNEVDRLKMA TGEMTTHAET YGLGMHQFSY SQAPSFQHQP 240 QHGPNELRAM QMQQFHSHSS NISTPHQPQF DLPTSYDLSE MLSSDSIGQF QGLDIGHRVS 300 HVLMPDGPSI SVNKTHNAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004502831.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502831.1	0.0	bZIP transcription factor 18
Swissprot	O22873	3e-83	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1S2YDZ3	0.0	A0A1S2YDZ3_CICAR; bZIP transcription factor 18
STRING	XP_004502831.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-83	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]