PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004502687.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 325aa MW: 35693.2 Da PI: 7.0051

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004502687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	35	94	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s XP_004502687.1 35 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 94 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	31	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.4E-34	36	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDTSQWAQGI GVVKQMENPC SKEAPMLERR ARPQKDQALN CPRCNSTNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK NKRSTPSSPS PSSSQIPSST ITKNIILNNH 120 DLASQNNNTN FPHSASQNPK IHQGQDLNLA YPPPQEDYNT LSKFIELPYE QDKPNTTTTT 180 NNNNNNNSSS SPSSHLSAME LLKTGIVNSS SSSRGLNSTN FMMPMSISES SAAAAAMYNS 240 TGFANLQDFK PGLNFSVVEG FENGYGGLEG IEESGSGARM LFPVEEMKQQ VPSSDHEFDE 300 QNNINTRNQG DSSGFWNGML GGGSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004502687.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502687.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A1S2YC74	0.0	A0A1S2YC74_CICAR; dof zinc finger protein DOF4.6-like isoform X1
STRING	XP_004502687.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-44	Dof family protein