PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004502570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 33600.4 Da PI: 9.5743 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ XP_004502570.1 16 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 61 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.3e-18 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a + +G++ W++Iar ++ gRt++ +k++w+ XP_004502570.1 68 RRPFTEEEEERLLAARRIHGNK-WALIARLFP-GRTDNAVKNHWHV 111 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.723 | 11 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-15 | 15 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 15 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.74E-14 | 19 | 60 | No hit | No description |
Pfam | PF13921 | 2.0E-17 | 19 | 79 | No hit | No description |
PROSITE profile | PS51294 | 26.611 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MDDSSSAAED TKTCPRGHWR PAEDEKLRQL VEQYGAQNWN SIAEKLQGRS GKSCRLRWFN 60 QLDPRINRRP FTEEEEERLL AARRIHGNKW ALIARLFPGR TDNAVKNHWH VIMARKQREQ 120 SKLLCGKRSF QHLYNNNNID DHNTSQQQQN LLFSSRIGYD NGRFYDKDHR IVNNINIVDT 180 PSSSLASWNF ASVPTTLNSS KGSDRFLYRI CPNPTFSSLP NYKRVVTNPF GFFGSSDHDG 240 KIKKDLMTST LITNLRSSKE KEQDHHHEAN INEHKEEVPF IDFLGVGVSS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 16 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004502570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502570.1 | 0.0 | transcription factor MYB52-like | ||||
TrEMBL | A0A1S2YBY5 | 0.0 | A0A1S2YBY5_CICAR; transcription factor MYB52-like | ||||
STRING | XP_004502570.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 5e-59 | myb domain protein 52 |