PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502537.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 20716.8 Da    PI: 9.3563
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.2e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skR+ngilKKA+E+SvLCda+v++i+f+ +gk++ey+s
  XP_004502537.1  9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYIS 59
                    79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-36296IPR002100Transcription factor, MADS-box
CDDcd002652.52E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.9E-2082161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.11684170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLILFGA SGKMHEYISP  60
STTLIDILDR YQRASGKTLW DAKHENLSNE IDRIKKENDS MQIELRHLKG EDVTSLNYKE  120
LMALEDALET GLTGVRDKKS EVHRMIKRNG KILEDENKEL NFLLQQHLAL EGVGNMHGQW  180
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-19191183MEF2 CHIMERA
6bz1_B9e-19191183MEF2 CHIMERA
6bz1_C9e-19191183MEF2 CHIMERA
6bz1_D9e-19191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502537.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4706310.0KJ470631.1 Medicago sativa PISTILLATA (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461314.21e-125floral homeotic protein PMADS 2
SwissprotQ0HA255e-93MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLQ5MAR01e-125Q5MAR0_PEA; MADS box transcription factor PEAM1
STRINGXP_004502537.11e-129(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]