PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004502417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 351aa MW: 40045.5 Da PI: 7.7876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.9 | 2.2e-07 | 155 | 176 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_004502417.1 155 FCEICGKGFKRDANLRMHMRAH 176 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00071 | 239 | 262 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k +s s+Lk+H++ + XP_004502417.1 239 YSCNRCHkKNYSVLSDLKSHMKQC 262 99*******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.34E-6 | 151 | 177 | No hit | No description |
PROSITE profile | PS50157 | 11.863 | 154 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0015 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 154 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 57 | 201 | 234 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 220 | 239 | 260 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MYNPNPDSRY TTRRLHPQED PNSTPNPQVP LRNLSLVRTR IDSLRTFLSQ SINTNTPLTT 60 DHITLVSNQI VSAIHNTIVN AAALVSYSEN LTVPGPSVFP PLKLKPEPSA VDKTNHQKSD 120 SRIEPAEDDD DYLVDEDCEI VELDAVELLA EHIHFCEICG KGFKRDANLR MHMRAHGNKF 180 KTPEALAKPI DDGGRRRATR FSCPFQGCNR NKMHMKFRAL KSVVCVKNHF KRSHCPKMYS 240 CNRCHKKNYS VLSDLKSHMK QCGECRWKCS CGTTFSRKDK LFGHVALFEG HMPDFLFEDE 300 EKEKGKQVMV EESEEDPMAM TFTQVELGQN CKDSHQNSNL RLEYWCCAIA G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004502417.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502416.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1 | ||||
Refseq | XP_004502417.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 | ||||
TrEMBL | A0A1S2YBK8 | 0.0 | A0A1S2YBK8_CICAR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1 | ||||
TrEMBL | A0A1S2YCQ8 | 0.0 | A0A1S2YCQ8_CICAR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 | ||||
STRING | XP_004502416.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 2e-71 | C2H2 family protein |