PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502203.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 320aa    MW: 36050.2 Da    PI: 8.6624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-174188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde+l +++++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_004502203.1 41 RGPWTSEEDEILSQYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 88
                     89******************************99************97 PP

2Myb_DNA-binding476e-1599139648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_004502203.1  99 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 139
                      89***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-223290IPR009057Homeodomain-like
PROSITE profilePS5129416.1143688IPR017930Myb domain
SuperFamilySSF466891.36E-2838135IPR009057Homeodomain-like
SMARTSM007179.1E-134090IPR001005SANT/Myb domain
PfamPF002491.5E-144188IPR001005SANT/Myb domain
CDDcd001672.04E-104388No hitNo description
PROSITE profilePS5129424.39789143IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2491144IPR009057Homeodomain-like
SMARTSM007172.7E-1393141IPR001005SANT/Myb domain
CDDcd001672.25E-1199139No hitNo description
PfamPF002499.9E-1499139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRNPSSTETN SSKKKKKKNS TNTTTTTTTT TPCCSKVGLK RGPWTSEEDE ILSQYINKEG  60
EGRWRTLPKR AGLLRCGKSC RLRWMNYLRP SVKRGQIAPD EEDLILRLHR LLGNRWSLIA  120
GRIPGRTDNE IKNYWNTHLS KKLISQGIDP RTHKPLDNPS SSSSSKPSPS LIVPNIINNH  180
QITTPNFTSS TPPHQHHQLI ATNKESQTCR NDDQILCQYH DYYPDQLVNN NYSDDMLITT  240
SNNNSTMNMN NNDDVFSSFL DSLINEEAFA AHRNVLLQPE NDPLISSAPT PALWGSPLMS  300
SNFIQNDNSP NQDQGASSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24391435108B-MYB
1gv2_A2e-24391432105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-243914325128MYB TRANSFORMING PROTEIN
1mse_C1e-24391432105C-Myb DNA-Binding Domain
1msf_C1e-24391432105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467602e-90AC146760.13 Medicago truncatula clone mth2-174d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502203.10.0transcription repressor MYB5-like
TrEMBLA0A1S2YCM30.0A0A1S2YCM3_CICAR; transcription repressor MYB5-like
STRINGXP_004502203.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-80myb domain protein 5