PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004502131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 154aa MW: 17693.1 Da PI: 7.7282 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1.1e-38 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk +rr+C++dC+++pyfpa++p++f++vh+++G snv k+l++lp re+a+++l+ eA++r++dPvyG+vg+i+kl qq++ +++ela XP_004502131.1 5 RCAACKSQRRRCPPDCIFSPYFPANDPQRFEYVHRIYGGSNVGKMLQQLPCYVREQAANTLYVEAQCRIQDPVYGCVGIISKLYQQIHDTEVELA 99 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_004502131.1 100 KIQTQI 105 *99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.801 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-38 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MIYGRCAACK SQRRRCPPDC IFSPYFPAND PQRFEYVHRI YGGSNVGKML QQLPCYVREQ 60 AANTLYVEAQ CRIQDPVYGC VGIISKLYQQ IHDTEVELAK IQTQIASHKI KNSQVESNFN 120 ILSTIDAESN LNFLPPQSNN MEFQLSSQIF NWFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004502131.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 3e-41 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502131.1 | 1e-113 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-45 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1S2YCI0 | 1e-112 | A0A1S2YCI0_CICAR; LOB domain-containing protein 24-like | ||||
STRING | XP_004502131.1 | 1e-112 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-47 | LOB domain-containing protein 24 |