PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502096.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 347aa    MW: 39127.6 Da    PI: 8.6211
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-09283337147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT+eE++ l+++v ++ +g     W++I +       ++Rt+ ++k++w++ 
   XP_004502096.1 283 RLFWTAEEEKTLKEGVLKFSTGnqniPWRKILEFGCrvfdNTRTPVDLKDKWRNM 337
                      678****************************9987799***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.3E-944119IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.76E-1062120IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.6868118IPR019787Zinc finger, PHD-finger
CDDcd154895.42E-670115No hitNo description
SMARTSM002499.3E-870116IPR001965Zinc finger, PHD-type
PROSITE patternPS01359071115IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.062278338IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.4E-10279341IPR009057Homeodomain-like
SuperFamilySSF466892.84E-11281339IPR009057Homeodomain-like
SMARTSM007172.8E-5282340IPR001005SANT/Myb domain
PfamPF002491.9E-6286337IPR001005SANT/Myb domain
CDDcd116603.84E-15286338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRKKSVCGGR RRSTTPSVSP LISPIPPLST SQDDNIATIY DSDTNTNTND DHTHAPLPDT  60
EPVESFDDNT CITCNQSGGP LLVCAQTDCP VTVHVTCIGS EPKFDYSGKF YCPYCSYKRA  120
LNKSRELREK VILAKKALSS FLEKDQTLRK DKDHQPVQPV QDHANRDDPV VSHSGEGKQH  180
NNNDHDLDRD RDRDRENEND KGKISVTSSS VSETNDSDSN SIAVKKGYPN AKRKVVSVKK  240
TLLWEQKTGG ASDVDDEEVT SSRTLKLQKQ NKNQNLLTGK RRRLFWTAEE EKTLKEGVLK  300
FSTGNQNIPW RKILEFGCRV FDNTRTPVDL KDKWRNMTSK EGKITKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279283KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120601e-39CU012060.10 M.truncatula DNA sequence from clone MTH2-62K13 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502097.10.0uncharacterized protein LOC101494287 isoform X1
TrEMBLA0A1S2YC030.0A0A1S2YC03_CICAR; uncharacterized protein LOC101494287 isoform X1
STRINGXP_004502096.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.18e-08telomere repeat binding factor 3