PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501928.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Dof
Protein Properties Length: 356aa    MW: 39765.1 Da    PI: 6.8478
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.5e-4056116262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++++lkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  XP_004501928.1  56 HDQSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 116
                     68999*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2846110IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3357114IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.18960114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGLSSLHACM ESSAEHWLQG TIHEESAGMD SSSPISGDML TCSRPMMDQR RLRPPHDQSL  60
KCPRCDSTHT KFCYYNNYSL SQPRYFCKTC RRYWTKGGTL RNIPVGGGCR KNKKVSSKKS  120
NDHNHHLANN NNNIHNQPQQ QQMPNSYIHH NPKDLQLSFP DVQFSHLSNL LGTNGALGNP  180
NFMENKYGNN VGMLEINHPR PIDFMESKLE GIIGSSSSRN FDFFGNSHDH MSMSMNMNMG  240
VGVGVGGDNN MMNGQNGLPH DFHHAFGGMS FDHGNNNNIG AYNLMDSCQR LMLPYDANDE  300
DDHNNESIDV KPNPKLLSLE WNQDQGCSDA GKESYGYGSW TGMMNGYGSS TTNPLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9542361e-98CT954236.4 M.truncatula DNA sequence from clone MTH2-3H12 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501928.10.0dof zinc finger protein DOF5.6
TrEMBLA0A1S2YAG90.0A0A1S2YAG9_CICAR; dof zinc finger protein DOF5.6
STRINGXP_004501928.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.13e-48Dof family protein