PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501883.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 353aa    MW: 40449.6 Da    PI: 6.924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_004501883.1 14 KGLWSPEEDEKLFNYITIFGVGSWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP

2Myb_DNA-binding46.58.3e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+ l++ ++++lG++ W+ Ia++++ gRt++++k++w++
   XP_004501883.1  67 RGMFSQQEQNLIISLHQLLGNR-WAQIAARLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24664IPR009057Homeodomain-like
PROSITE profilePS5129417.73961IPR017930Myb domain
SuperFamilySSF466895.62E-2912108IPR009057Homeodomain-like
SMARTSM007179.5E-121363IPR001005SANT/Myb domain
PfamPF002495.7E-141461IPR001005SANT/Myb domain
CDDcd001674.23E-101761No hitNo description
PROSITE profilePS5129424.10162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2565116IPR009057Homeodomain-like
SMARTSM007171.7E-1366114IPR001005SANT/Myb domain
PfamPF002494.3E-1467111IPR001005SANT/Myb domain
CDDcd001678.02E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT IFGVGSWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEQNLIIS LHQLLGNRWA QIAARLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPATHKPFL NYESLIKEEK EKSSMLMPLS QSQRFLATPT MHESSLMSDL NHYNNIVDLA  180
ALTEASRKFL MNKPAALDLD PLCYFEFQMD VAPFDYNLSL RNYQPTSLEQ NQFGSNSNYF  240
FTSMPCVDSS EFSDNNNNSA FLVNESSSNS SSMSVYQGAN EAGFSWKSEN KYLDPLLQFQ  300
VNAVKSEEFN KTSSWQEGLL LTHNNSIDFN ACPLRSLSED HSTEANFDVF QHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
1h8a_C6e-28711620128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501883.10.0transcription factor MYB41-like
TrEMBLA0A1S2YAD30.0A0A1S2YAD3_CICAR; transcription factor MYB41-like
STRINGXP_004501883.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-80myb domain protein 86