PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004501830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 472aa MW: 53043.3 Da PI: 5.1797 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.4e-11 | 135 | 157 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tGtCk+G +CkF+H+ XP_004501830.1 135 EDCSFYLKTGTCKFGFNCKFNHP 157 89********************8 PP | |||||||
2 | zf-CCCH | 31 | 4.2e-10 | 181 | 203 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C++++r+G Ck+G+ CkF+H XP_004501830.1 181 QTECKYYSRSGGCKFGNDCKFNH 203 679******************** PP | |||||||
3 | zf-CCCH | 41.4 | 2.4e-13 | 227 | 250 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG Ck+G++CkF+H+ XP_004501830.1 227 EKECPYYMRTGSCKFGSSCKFNHP 250 689********************9 PP | |||||||
4 | zf-CCCH | 26.2 | 1.4e-08 | 361 | 387 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ + CkF+H++ XP_004501830.1 361 PGEPECSFFLKTGDCKFKSHCKFHHPK 387 5799*********************96 PP | |||||||
5 | zf-CCCH | 34.2 | 4.4e-11 | 409 | 432 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G+ CkF H+ XP_004501830.1 409 QNVCTHYSRYGICKFGPACKFDHP 432 568********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.79E-6 | 131 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 135 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 137 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.4E-5 | 178 | 205 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 181 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 182 | 207 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 184 | 205 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.713 | 224 | 252 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 225 | 251 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-11 | 227 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 230 | 249 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 360 | 388 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 360 | 387 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-6 | 362 | 387 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 365 | 389 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 404 | 432 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 406 | 433 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 406 | 434 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 409 | 432 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-4 | 411 | 431 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MEPLEQSESI GSSIKDPQLS SHIQSLDDDY HDPQPPNLNH ITHLDEELQN KLDLKDEDEI 60 EGKSSNFEVR DEHLCDEDAS PESDKGQGFH HDDDDGWIGD DEVSDWIENV SEKVDEVENK 120 DERRHEQYPL RPEAEDCSFY LKTGTCKFGF NCKFNHPIRR RNQAFKEKVG ERDELEERSG 180 QTECKYYSRS GGCKFGNDCK FNHTRGKCSA VPVSELNFLG LPIRLGEKEC PYYMRTGSCK 240 FGSSCKFNHP DPTSVGGYDS TSGYGNGSSI SLQDASQSST PSWSSTRKLN ETTPFVPIII 300 SPSPGASPRS SDWNGYQAPF YLSERSMHPP SSYAVNNPAV ETNVYMHRHK QMPVEEFPER 360 PGEPECSFFL KTGDCKFKSH CKFHHPKSRI ARLPPIILSD KGLPLRPDQN VCTHYSRYGI 420 CKFGPACKFD HPINPPPPPP TMRGHDQQSS YTNSASIEEE AGSGGASDAT IQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004501830.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501830.1 | 0.0 | zinc finger CCCH domain-containing protein 67-like | ||||
Swissprot | Q9STM4 | 1e-135 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A1S2YA89 | 0.0 | A0A1S2YA89_CICAR; zinc finger CCCH domain-containing protein 67-like | ||||
STRING | XP_004501830.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4156 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-122 | C3H family protein |
Publications ? help Back to Top | |||
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