PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501829.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 501aa    MW: 57093.2 Da    PI: 4.823
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.6e-11571203299
                     --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +k++ led+sg++W v++  ++ +g++ +++GW  F   +gL+ g  vvF  +++ +f   vk+++k
  XP_004501829.1  57 VNKKINLEDSSGQRWVVTV--SNDDGSFAFKEGWDVFSLNHGLDIGYLVVFNCINKLDF--DVKIYDK 120
                     3568***************..*******************************8876666..8888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.45E-1116119No hitNo description
SMARTSM010190.003618121IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-1426123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.50328121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-1328123IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-843120IPR003340B3 DNA binding domain
PROSITE profilePS508639.869407501IPR003340B3 DNA binding domain
SMARTSM010190.13410499IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-12411496IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-8418496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-11420493IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-8420496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGRNPQVCRS CIHNCRLFHR TTTPSSPTSF YRFILSQNDF SVLYLPSKLK HTMPLLVNKK  60
INLEDSSGQR WVVTVSNDDG SFAFKEGWDV FSLNHGLDIG YLVVFNCINK LDFDVKIYDK  120
SICERLEFSK KKNRKKRSRC RSGSPDRGCM EDDLGGAQNS TENDNDDGRG KTMRTLEQIV  180
DTCCITSRMY QNDVDFFNID PMFEEVLGTG DASYASKLEL FGRNNSFGAT DKSAYDMTSA  240
LILEENEENK SIMSNMEFQE YNFSENLGSD QAAVSGERFN GITNLIDAQI HIGEIKEVPM  300
NMTPKMCSSN DQLHATELPE GEFNQDNERH FETASAVSCV VPTDNDCLRF NEISNLLDDQ  360
IHYGEVKEVP MDMTPKSCSL NDQSNVTGLP ETFKREFNED IESDFETAAT VTCVVLTDNG  420
CLKLPKSLSL PHPKRLRMKR TVVLLRDPLR RLWPVLYVEE TWLTSGWLDF QRANNIKQAD  480
VCVFQVENRS ERIITVDIDH K
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501829.10.0uncharacterized protein LOC101495675 isoform X1
TrEMBLA0A1S2YA870.0A0A1S2YA87_CICAR; uncharacterized protein LOC101495675 isoform X1
STRINGXP_004501829.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828