PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501808.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 269aa    MW: 30054.9 Da    PI: 7.1628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.82e-08178218954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++++P       +K++ a++L +A++Y+k L
  XP_004501808.1 178 ARHRRERISERIRILQRMVPGG-----TKMDTASMLDEAIHYVKFL 218
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-14170229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-14173228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6179218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-6192223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDCNNHIKPS LSPEEQNIDM MLMMMMQLPE FSSSSNGHES VEPFPPSDHE YYNSANASNN  60
TLPLADLIDN NPPNQTPWSS SFTNLPLQAS TTNTISFTNN TPLILQETPP TLFSNYPNEV  120
VTNLYGTVPS EKRNSMAAMR EMIFRIAAMQ PIYIDPESVK APKRRNVKIS KDPQSVAARH  180
RRERISERIR ILQRMVPGGT KMDTASMLDE AIHYVKFLKT QVQSLKERAA VAAGNNINNN  240
RTVSGIGFPA SMSSTSTYQA RSLEHYGDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120431e-100CU012043.5 M.truncatula DNA sequence from clone MTH2-63O12 on chromosome 3, complete sequence.
GenBankCU1796971e-100CU179697.4 M.truncatula DNA sequence from clone MTH2-63I19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501808.10.0transcription factor HEC1-like
TrEMBLA0A1S2YA790.0A0A1S2YA79_CICAR; transcription factor HEC1-like
STRINGXP_004501808.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-44bHLH family protein