PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501760.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LFY
Protein Properties Length: 395aa    MW: 44938.7 Da    PI: 7.0013
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY650.22.9e-19813811386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapp...arlleeaavseap....leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 
                     mdp+af+aslfkwdpr++  ++p    +l  + +v ++p    l  +     r+l +leelf+ayG+ry+t+akiaelGftvstLvdmkdeeldd
  XP_004501760.1   1 MDPDAFTASLFKWDPRTVLPTAPslrPQL-LDYTV-SPPttapLPYHPPRLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDD 93 
                     9***************9985544343222.22323.33312224455555566677*************************************** PP

         FLO_LFY  89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekeaagsggeglgeaelvaaeekkse 182
                     +m+sls+ifr+dllvGeryGikaa+raerrrl++ee   krr lls d+++aldalsqeglseepv + ekea+gsgg++  ++e+++aee    
  XP_004501760.1  94 MMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDDEE--IKRRSLLSGDTTNALDALSQEGLSEEPVVQrEKEAVGSGGGS--TWEVAVAEE---- 180
                     **********************************88..888889*********************999677788888877..999988873.... PP

         FLO_LFY 183 eekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekc 277
                      ++k++ + +++r ++k+ + ++de+ee ee+e++++sg +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekc
  XP_004501760.1 181 -RRKRQ-QIRRRRMRMKS-NVDRDENEEGEEEEEDNNSGGGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKC 272
                     .33333.23445555444.456788888888888999999999**************************************************** PP

         FLO_LFY 278 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPt 372
                     PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrr fkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvPt
  XP_004501760.1 273 PTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPT 367
                     *********************************************************************************************** PP

         FLO_LFY 373 kLrqLChlerskas 386
                     kLrqLCh+er++a+
  XP_004501760.1 368 KLRQLCHAERNNAA 381
                     ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.6E-2071381IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDPDAFTASL FKWDPRTVLP TAPSLRPQLL DYTVSPPTTA PLPYHPPRLP RELGGLEELF  60
QAYGIRYYTA AKIAELGFTV STLVDMKDEE LDDMMNSLSQ IFRWDLLVGE RYGIKAAIRA  120
ERRRLDDEEI KRRSLLSGDT TNALDALSQE GLSEEPVVQR EKEAVGSGGG STWEVAVAEE  180
RRKRQQIRRR RMRMKSNVDR DENEEGEEEE EDNNSGGGGG ERQREHPFIV TEPGEVARGK  240
KNGLDYLFHL YEQCREFLIQ VQAIAKERGE KCPTKVTNQV FRYAKKAGAS YINKPKMRHY  300
VHCYALHCLD EEVSNELRRG FKERGENVGA WRQACYKPLV AIAARQGWDI DAIFNAHPRL  360
SIWYVPTKLR QLCHAERNNA AASSSVSVGT AHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1112193892172PROTEIN LEAFY
2vy2_A1e-1112193892172PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180190RRKRQQIRRRR
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501760.10.0protein UNIFOLIATA
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
TrEMBLA0A1S2YB990.0A0A1S2YB99_CICAR; protein UNIFOLIATA
STRINGXP_004501760.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-106floral meristem identity control protein LEAFY (LFY)