PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501682.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 292aa    MW: 32851.2 Da    PI: 6.9629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1299150155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  XP_004501682.1  99 QRMTHITVERNRRKQMNHYLNVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 150
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.14E-1397154No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1298154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.69798149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1698165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1099150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-9104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MALETVVFPQ DPFTYNNYLY SLVGEAGEEQ ENVLLGIINN NNVGQNQNEH ANWDSCSHSS  60
SPEVCTVDQT LSSTVEATVG RRKRRRTKNT KNKEEIENQR MTHITVERNR RKQMNHYLNV  120
LRSLMPSSYV QRGDQASIIG GAINFVKELE QLLQSMGGQN KTKQIGLNGT PFAEFFTFPQ  180
YTTGATQSNT LTMEQHKQWA VADIEVTMVD THANIKILSK KQTGQLMKIV LGLQTLRLTI  240
LHLNVTTLAD MVLFSLSVKV EEGSQLNTVD EIAAAVNQLL RTVQQELAFH LN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185RKRRR
28186RKRRRT
38188RKRRRTKN
499110RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR6970551e-73FR697055.1 Medicago truncatula mRNA for basic helix loop helix 1 (bHLH1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501682.10.0transcription factor bHLH96-like isoform X1
SwissprotQ9C7T41e-88BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S2Y9X30.0A0A1S2Y9X3_CICAR; transcription factor bHLH96-like isoform X1
STRINGXP_004501682.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]