PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501661.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 303aa    MW: 33576.9 Da    PI: 6.7299
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.8e-17197233135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  XP_004501661.1 197 CTHCGTSSksTPMMRRGPSGPRTLCNACGLFWANRGT 233
                     *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.4E-106297IPR010399Tify domain
PROSITE profilePS5132014.9576297IPR010399Tify domain
PfamPF062001.5E-126696IPR010399Tify domain
PROSITE profilePS5101712.729129171IPR010402CCT domain
PfamPF062036.2E-15129171IPR010402CCT domain
PROSITE profilePS5011410.739191247IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-15191244IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13194247No hitNo description
Gene3DG3DSA:3.30.50.102.3E-16195238IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.51E-15196238No hitNo description
PfamPF003205.0E-15197233IPR000679Zinc finger, GATA-type
PROSITE patternPS003440197224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYNSMNMSDQ IKNNEDADNH IHYDSHTLED GSGEGEGPIH DVSLEDVYVS GDGNHADMSI  60
QRFDDSSQLT LSFRGQVYVF DSVTPEKVQS VLLLLGGCEL SSGSQCLDTS PLNQRSGTEF  120
PTRCSQPQRA ASLIRFRQKR KERNFDKKVR YGVRQEVALR MQRSKGQFTS SKKQDGANNW  180
GSDPESGQDV VQSETSCTHC GTSSKSTPMM RRGPSGPRTL CNACGLFWAN RGTLRDLSTS  240
KRHHEQHTLA APPEQGTLRD LSNSKRNHEL HTLASPKTVD EGNDLNCRTA LPAPNDTVDD  300
KTT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1386620.0BT138662.1 Medicago truncatula clone JCVI-FLMt-15G4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501661.10.0GATA transcription factor 25-like
SwissprotQ9LRH66e-79GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S2Y9V70.0A0A1S2Y9V7_CICAR; GATA transcription factor 25-like
STRINGXP_004501661.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-73GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]