PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004501577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25934.9 Da PI: 10.4805 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.9e-17 | 130 | 219 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp++f++++ + ++ ++tl de+g ++ ++ +k++ l++GW++F+ a++L +gD ++F+l++r+ f +v XP_004501577.1 130 FIKSMLQSHVTGGFWLGLPNHFCKKNL--PLRDAMMTLIDEDGDEYPTTYLAQKTG----LSAGWRGFAIAHKLADGDALIFELVKRTVF--KVY 216 89*********************9994..345679***************444444....*************************99999..888 PP EE- CS B3 96 vfr 98 ++r XP_004501577.1 217 IIR 219 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.6E-21 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-24 | 123 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.82E-26 | 128 | 219 | No hit | No description |
Pfam | PF02362 | 8.3E-15 | 130 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-22 | 130 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.365 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVSSSYEDSR RKRMEENRKR MEALNLPQLS QSLHKSSSPI KKPSPSKPRI IQKELVVVRR 60 SGRVANLPAP IYKEVLIDRV IIPRNRTSRG GYNMYRDYSK RVYASDEARE EALQKADKLQ 120 SDLNSKHPIF IKSMLQSHVT GGFWLGLPNH FCKKNLPLRD AMMTLIDEDG DEYPTTYLAQ 180 KTGLSAGWRG FAIAHKLADG DALIFELVKR TVFKVYIIRV NSPSEGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004501577.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501577.1 | 1e-169 | B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 1e-72 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1S2Y9P2 | 1e-167 | A0A1S2Y9P2_CICAR; B3 domain-containing protein At5g42700-like | ||||
STRING | XP_004501577.1 | 1e-168 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-60 | B3 family protein |
Publications ? help Back to Top | |||
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