PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004501440.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Nin-like

Protein Properties

Length: 467aa MW: 53208 Da PI: 6.0857

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	65	1.2e-20	359	408	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+dl F+lpi++A+ ++++c+Tv+K++CR+ G++RWP+Rk+ks+ XP_004501440.1 359 GKLTLNDLCDLFHLPIEEASECVKLCPTVVKKTCRKAGLARWPYRKVKSI 408 579*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.642	343	428	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-16	360	408	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MEDIRFQFSD PYERPISPSF FNMSNPTLAD LSINNNNGPT AMSHQNHHEV FQQRQNSNYN 60 GVLQQRQSGN YNDPFSNSLL SQQNHHGVIQ QGHGSNFDQF PTPLSHQQNN RGSNNDDLFT 120 IIQQSKLNHH EVLQQGQGGN NNNNNNNETF SHPMVEDQNV NNNFTFGGNN FEVGSTSQIH 180 DNQNQPANDI PVLLNHAEVL ALDQWPPAPL PYFCSCCHVL REIIHANGIQ FEKLEIHGRL 240 GLITHAIHHQ TPVNGDAPIY QMVDFCRRSL EEIKIFLAQY CVERNRAGYF ILQDPMSAYY 300 ETLCTGLDWI EDLNMEDPVD ANNNNNQNNS DEIVEPQEQE GENGTPTKKN LSVQRKKAGK 360 LTLNDLCDLF HLPIEEASEC VKLCPTVVKK TCRKAGLARW PYRKVKSILK QIELLGSQLH 420 TQDPATRART QEEINRLKHE MIQHCGGQIP TAMYNIPPLQ QQQHQQQ

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MEDIRFQFSD PYERPISPSF FNMSNPTLAD LSINNNNGPT AMSHQNHHEV FQQRQNSNYN  60
GVLQQRQSGN YNDPFSNSLL SQQNHHGVIQ QGHGSNFDQF PTPLSHQQNN RGSNNDDLFT  120
IIQQSKLNHH EVLQQGQGGN NNNNNNNETF SHPMVEDQNV NNNFTFGGNN FEVGSTSQIH  180
DNQNQPANDI PVLLNHAEVL ALDQWPPAPL PYFCSCCHVL REIIHANGIQ FEKLEIHGRL  240
GLITHAIHHQ TPVNGDAPIY QMVDFCRRSL EEIKIFLAQY CVERNRAGYF ILQDPMSAYY  300
ETLCTGLDWI EDLNMEDPVD ANNNNNQNNS DEIVEPQEQE GENGTPTKKN LSVQRKKAGK  360
LTLNDLCDLF HLPIEEASEC VKLCPTVVKK TCRKAGLARW PYRKVKSILK QIELLGSQLH  420
TQDPATRART QEEINRLKHE MIQHCGGQIP TAMYNIPPLQ QQQHQQQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501440.1	0.0	hybrid signal transduction histidine kinase A
TrEMBL	A0A1S2Y9A2	0.0	A0A1S2Y9A2_CICAR; hybrid signal transduction histidine kinase A
STRING	XP_004501440.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	9e-09	RWP-RK domain-containing protein