PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501398.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 289aa    MW: 31782.6 Da    PI: 7.0438
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.65.9e-09447441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                    + C+ +++  ++l+C+ ++ +lC +C ++ H        H +v+
  XP_004501398.1  4 KLCDSCKSATATLYCRPDSAFLCTTCDSKVHAAnklasrHPRVT 47
                    68*****************************6567777787765 PP
2zf-B_box23.89.5e-084691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ +++  C+ +   lC +C   +H        H++ p+
  XP_004501398.1 46 VTLCEVCEQAPAHVTCKADAASLCITCDRDIHTAnplaarHERLPI 91
                    578*****************************65788888988775 PP
3CCT69.86.8e-24231274144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_004501398.1 231 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 274
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011911.064148IPR000315B-box-type zinc finger
PfamPF006437.2E-7447IPR000315B-box-type zinc finger
CDDcd000214.61E-8548No hitNo description
PROSITE profilePS5011910.7364491IPR000315B-box-type zinc finger
PfamPF006434.7E-64691IPR000315B-box-type zinc finger
CDDcd000218.77E-74791No hitNo description
SMARTSM003361.3E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.797231273IPR010402CCT domain
PfamPF062031.2E-17231273IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASKLCDSCK SATATLYCRP DSAFLCTTCD SKVHAANKLA SRHPRVTLCE VCEQAPAHVT  60
CKADAASLCI TCDRDIHTAN PLAARHERLP ITPFFDSIDS HSVKPIHHNN NHYDTGEDEA  120
EAASWLISDP KADLNCSPYI FSDSEAIPFM DLDYGTIDNK SDVVVPVHGN FEPFSYKINS  180
VQLQTDLETP SQSPMSHSVS SSSMDVGVVP DGNAVSDISN CGYGKAVAAD REARVLRYRE  240
KRKNRRFEKT IRYASRKAYA ETRPRIKGRF AKRTDAVDSL AGYGVVPTC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501398.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501398.10.0zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-93COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1S2YAE20.0A0A1S2YAE2_CICAR; zinc finger protein CONSTANS-LIKE 4-like
STRINGXP_004501398.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.14e-90CONSTANS-like 4