PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501147.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 316aa    MW: 35287.2 Da    PI: 6.7011
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.3e-18206240135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_004501147.1 206 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 240
                     99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-824294IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.308200236IPR000679Zinc finger, GATA-type
SMARTSM004015.6E-17200250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14200237IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-16201264No hitNo description
CDDcd002028.51E-15205252No hitNo description
PfamPF003206.2E-16206240IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEAQEIFHTN LFPSSDTATN VNTASTDHFI VEDLFDFSND DVAITDPTSQ SPPTNSDYSP  60
PLQINLDSNF LTQNSSPKSL DAPFSGDLSV PYDDLAELEW LSKFAEESFS NDDLQKLQLI  120
SGVKASKNGA SKTHEEPNII FNPQVSVPAK ARSKRSRGPP CNWTSRLLVL SPTTTAESSH  180
YDTISPPKKS SPRKRDTTDG GEGRRCLHCA TDKTPQWRTG PLGPKTLCNA CGVRYKSGRL  240
VPEYRPAASP TFVLTKHSNS HRKVMELRRQ KDVMMAQQQQ LLQLHHHQNI LFDVPSNGDD  300
YLIHEHVGPD FRHLYS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501147.10.0GATA transcription factor 9
SwissprotO826321e-91GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A1S2Y8Q50.0A0A1S2Y8Q5_CICAR; GATA transcription factor
STRINGXP_004501147.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-91GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]