PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004501147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 316aa MW: 35287.2 Da PI: 6.7011 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.3 | 4.3e-18 | 206 | 240 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l XP_004501147.1 206 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 240 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.7E-82 | 4 | 294 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.308 | 200 | 236 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.6E-17 | 200 | 250 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 200 | 237 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 8.08E-16 | 201 | 264 | No hit | No description |
CDD | cd00202 | 8.51E-15 | 205 | 252 | No hit | No description |
Pfam | PF00320 | 6.2E-16 | 206 | 240 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 206 | 231 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MEAQEIFHTN LFPSSDTATN VNTASTDHFI VEDLFDFSND DVAITDPTSQ SPPTNSDYSP 60 PLQINLDSNF LTQNSSPKSL DAPFSGDLSV PYDDLAELEW LSKFAEESFS NDDLQKLQLI 120 SGVKASKNGA SKTHEEPNII FNPQVSVPAK ARSKRSRGPP CNWTSRLLVL SPTTTAESSH 180 YDTISPPKKS SPRKRDTTDG GEGRRCLHCA TDKTPQWRTG PLGPKTLCNA CGVRYKSGRL 240 VPEYRPAASP TFVLTKHSNS HRKVMELRRQ KDVMMAQQQQ LLQLHHHQNI LFDVPSNGDD 300 YLIHEHVGPD FRHLYS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004501147.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501147.1 | 0.0 | GATA transcription factor 9 | ||||
Swissprot | O82632 | 1e-91 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | A0A1S2Y8Q5 | 0.0 | A0A1S2Y8Q5_CICAR; GATA transcription factor | ||||
STRING | XP_004501147.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-91 | GATA transcription factor 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|