PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004501060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 38996.8 Da PI: 4.3039 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.8e-11 | 178 | 221 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L XP_004501060.1 178 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTAILGDTIDYMKEL 221 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.977 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.81E-4 | 173 | 225 | No hit | No description |
SuperFamily | SSF47459 | 8.11E-15 | 175 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-11 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-9 | 178 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-15 | 179 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00142 | 266 | 304 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEFYDENFME ELMALRRETY ETNPSQEENY QFLSSSHNNN NLSFDSFDQN SFSYLPNSSC 60 IQQVPQSFND INEYSYTFNE IDGSLLLDES STTPQILDSY YNSTLLDAPF ISQEDFPLSM 120 IAEEDPCLLG EELQNLELQT TCKMEPTQSP EMPVFNTSSS SERKNPSKKL QGKPSKNLMA 180 ERRRRKRLND RLSMLRAIVP KISKMDRTAI LGDTIDYMKE LLEKINNLQQ EIELDSNMTS 240 FINDVKQNEI LIRNSPKFEV ERSGDTRVEI CCAGKPGLLL STVNTLEALG LEIQQCVISC 300 FNDFRMQASC SEELERRTML SSEDIKQALF RSAGYGGRCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 187 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004501060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT148982 | 1e-111 | BT148982.1 Medicago truncatula clone JCVI-FLMt-13F18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501060.1 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 2e-78 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A1S2YA27 | 0.0 | A0A1S2YA27_CICAR; transcription factor bHLH93-like | ||||
STRING | XP_004501060.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-80 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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