PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501031.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 402aa    MW: 43501.9 Da    PI: 8.8586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-054567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_004501031.1 45 FICEICNKGFQREQNLQLHRRGH 67
                    89*******************88 PP
2zf-C2H214.97.6e-05121143123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k +  ks+ k H++++
  XP_004501031.1 121 WKCERCSKNYAVKSDWKAHMKSC 143
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-74467No hitNo description
Gene3DG3DSA:3.30.160.606.6E-64467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.5E-54567IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.974567IPR007087Zinc finger, C2H2
SMARTSM003550.00444567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM0035527086116IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-5108142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-7116141No hitNo description
SMARTSM00355120121141IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAEPQKNSSP SPSPSKKKRS LPGMPDPDAE VIALSPQTLL ATNRFICEIC NKGFQREQNL  60
QLHRRGHNLP WKLRQRASEE IRKKVYVCPE TSCVHHNPSR ALGDLTGVKK HFCRKHGEKK  120
WKCERCSKNY AVKSDWKAHM KSCGTREYKC DCGTLFSRRD SFMTHRAFCD VLGNESGKGG  180
SNFVAVTSSS SSQPTPPLTP SKSSVLSTTA NLSIQSSDTA ENQTRLSPPS SNASNSTSCC  240
STFSNLMSSL AHSDCPTTFS ITEPTTLSLS TPLYLSNNNN KDYLLPHYPP QPALSATALL  300
QKAAEMGSSN SSLLLALGLK DNSTVSISST TTVQWNGHVK QENELVANNF GLGLPYSNGM  360
MGSTGQPMTR DLLGLSIGLG RGDDLSSLLT SFGGNIGSTE EG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-31117178364Zinc finger protein JACKDAW
5b3h_F2e-31117178364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17183KLRQRASEEIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501031.10.0zinc finger protein ENHYDROUS-like
RefseqXP_004501032.10.0zinc finger protein ENHYDROUS-like
RefseqXP_004501033.10.0zinc finger protein ENHYDROUS-like
RefseqXP_027190176.10.0zinc finger protein ENHYDROUS-like
SwissprotQ9SCQ61e-118IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S2Y9L70.0A0A1S2Y9L7_CICAR; zinc finger protein ENHYDROUS-like
STRINGXP_004501031.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]