PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 382aa MW: 42394 Da PI: 7.2318 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.8 | 5.1e-05 | 270 | 308 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_004500989.1 270 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 308 7788899*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.719 | 258 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.66E-5 | 268 | 312 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-11 | 268 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-9 | 272 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MIMESTTNLQ QDQPSPVVDP SSSSASSSLS NSTPSYATIH SWNPNITLNN AGNFNSNLQE 60 ATNQRSRSCL IAHKSDMIQD LGYHNQWTSD EFSKEEISFA NFPKFTEMLN YTTPNNSTML 120 KTLLTEQDFY SSQSYNNPNF GGTNHIASSQ IHPSINISNL NHYSSSTTLD MNMQSLDLLT 180 TSPTSFTNTS QPHFGKFTHH DNNLSFHLHP MHHSSSSNSS NQSLLSNIGT VETKRGCTLM 240 ESKVSQSQTA LKKSRSSSES RPSCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA 300 IGYIKFLQGQ VETLSVPYMK LSQNQNNRVM RGDSTTCDIN GEPKQDLRSR GLCLVPLSCM 360 SYIVTDGGTE PWQQHHNFGR PT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500989.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500989.1 | 0.0 | transcription factor bHLH110 | ||||
TrEMBL | A0A1S2Y8E2 | 0.0 | A0A1S2Y8E2_CICAR; transcription factor bHLH110 | ||||
STRING | XP_004500989.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4045 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 9e-44 | bHLH family protein |