PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500946.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | E2F/DP | ||||||||
Protein Properties | Length: 382aa MW: 43185.7 Da PI: 6.1946 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85.6 | 3.8e-27 | 115 | 180 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++ +++g+++ln+ a+ L +v ++RRiYDi+NVLe+++liek++kn+irwkg XP_004500946.1 115 RYDSSLGLLTKKFVSLIQDAKDGTLDLNQTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 180 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.7E-29 | 112 | 181 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.36E-17 | 115 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.2E-35 | 115 | 180 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.9E-25 | 117 | 180 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 7.85E-25 | 191 | 297 | No hit | No description |
CDD | cd14660 | 1.02E-30 | 191 | 298 | No hit | No description |
Pfam | PF16421 | 2.4E-22 | 196 | 295 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MSTTTPSGED RIEPPLIPHH FSQFKFDLCH SPSPHFTILP LSQRNEINNV KLHACNVEAF 60 PTHQSNTVNL PPSIQTEPIQ RRKLNGKSKV SRNAKSASKR SNTESPNSTA VNNCRYDSSL 120 GLLTKKFVSL IQDAKDGTLD LNQTAEVLEV QKRRIYDITN VLEGIGLIEK TSKNHIRWKG 180 CDGLGPRELE DQVNALKAEV ENLYDEECKL EECISKKKEL IQNLEKGENS QKYLFFTKED 240 ILTLPCFQNK QLIAIKAPKA SFIEVPDPDE ELGFHQRQYR MIVRSATGPI TLYLLNKHDH 300 KFEGVSVKQA KLMDPSWSSN NLRMEDMEIL ESQGCEKNPS GNLGSLGSEA FGIQQITPTD 360 FDVDNDYWFQ SDPNVGLTQL WG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 6e-25 | 114 | 181 | 6 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00190 | DAP | Transfer from AT1G47870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500946.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500946.1 | 0.0 | transcription factor E2FC isoform X1 | ||||
TrEMBL | A0A1S2Y8A7 | 0.0 | A0A1S2Y8A7_CICAR; transcription factor E2FC isoform X1 | ||||
STRING | XP_004500945.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11885 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47870.2 | 4e-93 | E2F/DP family protein |