PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500875.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Nin-like
Protein Properties Length: 904aa    MW: 101784 Da    PI: 5.1376
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.47e-29586636252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  XP_004500875.1 586 DKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 636
                     689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.632573656IPR003035RWP-RK domain
PfamPF020426.4E-25588636IPR003035RWP-RK domain
SuperFamilySSF542779.57E-23804895No hitNo description
Gene3DG3DSA:3.10.20.2404.4E-21809890No hitNo description
PROSITE profilePS5174525.81810893IPR000270PB1 domain
SMARTSM006663.4E-22810893IPR000270PB1 domain
PfamPF005641.2E-16811892IPR000270PB1 domain
CDDcd064072.39E-39811892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MEDGALTSST TMMEAPQPDE NSMDFDYVSE LLLDGCWLEA SADGSDFLLQ SSPFSNPLFD  60
PSFTWPSLDN IDPPDNVDRH KSQDASLGTE QESRSIVNVD GGSNQKEYRF ETYSGEGFFS  120
RWWIGPTPNS GPGGSFIVEK LIRALKWIKD FDRNKDMLIQ IWVPVNRGDD RPFLTANDLP  180
FSLETRSLNL ARYREISVRY QFSAEEEDSK DLVAGLPGRV YRDKVPEWTP DVRFFRSDEY  240
PRVDHAQECD IHGTLAVPVF EQGSRTCLGV IEVVMTTQQS NYSAELETVC KALEVVDLRS  300
SRHSSLQNVK ARDRSYETAL PEIQEVLRSA CEMHKLPLAQ TWIPCIQQGK DGCRHSDDNY  360
VHCISPVEYA CYIGDSSVRF FHEACMEHHL LKGQGVAGGA FMTNQPCFSA DITSLSKIDY  420
PLSHHARLFG LRAAVAIRLR SIYSTSDDYV LEFFLPVDCN DSGEQKKMLT SLSMIIQRVC  480
RNLRVITNKE LEKNNLSANE VMDLADSGFA SGATWSELQH RRMAASLDGD FFFNETMGGK  540
FSEQTQQQEN LILKGDTESG RECSLSVEGN LLSSVGIREK RRPKADKTIT LQVLRQYFAG  600
SLKDAAKNIG VCTTTLKRIC RQHGIKRWPS RKIKKVGHSL QKLQLVIDSV QGASSTFQID  660
SFYSKLSDLA SPNLSGTSLI STLNQIDNQV SLNTQPDPDS LSPEDASKSP STSCSQSSFS  720
SHSCSSMSEQ QHHTNNFASN KDPLVGEDSV DVVLKRIRSE AELKSLIQDN NKANVMPRSQ  780
SHETLGEHPI TEYHQSLLKT DRKASQKEDA HRVKVTYGDE KSRFRMPKTW CYEDVVQEIG  840
RRFNVSDMSK FDIKYLDDDC EWVLLTCDAD LEECIDVCQS SEISTIKLCL QPSSNFIRSS  900
LEFR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500875.10.0protein NLP4 isoform X1
RefseqXP_012571497.10.0protein NLP4 isoform X1
RefseqXP_027190436.10.0protein NLP4 isoform X1
TrEMBLA0A1S2Y9P00.0A0A1S2Y9P0_CICAR; protein NLP4 isoform X1
STRINGXP_004500873.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein