PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 39840.6 Da PI: 8.143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.3e-10 | 159 | 206 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_004500808.1 159 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 206 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-17 | 153 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.94E-10 | 153 | 210 | No hit | No description |
PROSITE profile | PS50888 | 15.618 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-17 | 155 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-7 | 159 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MNLQQQQHHQ SYSSSSSSLN HSPSGFINHF HMPIVAAPGI DVNSAISRTF SCPPVLVDPK 60 LNHSPSLGKD NCSNKRKPEK AHNPKLKIVD ENDNKDKKRI KVGVEDGESK ITRQASGKLK 120 NTNNKKEKCD TSNSKASEVQ NEKPDYIHVR ARRGQATDSH SLAERVRREK ISERMKYLQD 180 LVPGCNKITG KAGMLDEIIN YVQSLQRQVE FLSMKLATVN PRHDFNIDDL FEKEVFPNCD 240 ANATFSAMGI SSELNSINPY VQFNSPQQFV SYGGLDNTGM NPSDMGLRRT ISAPVSLPET 300 FIDSSCFSQI LPSTTWEGDF QNLYNNLSFD QARATSFSSQ SQLFTGLGEA SNLKMEM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500808.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140584 | 0.0 | BT140584.1 Medicago truncatula clone JCVI-FLMt-18N21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500808.1 | 0.0 | transcription factor bHLH63-like | ||||
Swissprot | Q8GY61 | 6e-57 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A1S2Y7Z6 | 0.0 | A0A1S2Y7Z6_CICAR; transcription factor bHLH63-like | ||||
STRING | XP_004500808.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 2e-59 | cryptochrome-interacting basic-helix-loop-helix 1 |