PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 304aa MW: 34049.2 Da PI: 6.9401 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.9 | 1.4e-18 | 220 | 253 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG++y++ + XP_004500773.1 220 CSHCQVDKTPQWRTGPLGAKTLCNACGVRYKSGR 253 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.3E-81 | 19 | 303 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 4.09E-14 | 213 | 276 | No hit | No description |
PROSITE profile | PS50114 | 11.319 | 214 | 250 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.8E-14 | 214 | 268 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.9E-14 | 218 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.06E-14 | 219 | 267 | No hit | No description |
Pfam | PF00320 | 1.6E-16 | 220 | 253 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 220 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEFAVAKALK PSLRREFVFQ QTLGEEVFCL NTNTVVTGED FSVDDLLDFS NNDTLHHEHH 60 NDDEEKDSLS LSSHSLSDDS NSNSTDASYD SIFSTELLVP DDDVADLEWV SHFVDDSLPE 120 LSLLYPVQIQ SNACPQHETK HVKITRLPSE NVKIITKTRT AKNRKPNPHV WTFSPLLLRP 180 FFTSPPLVSG EPPAKKQKKK AEAQAVVGEA QDQAQLQRRC SHCQVDKTPQ WRTGPLGAKT 240 LCNACGVRYK SGRLFSEYRP ACSPTFSSKV HSNSHRKVLE IRRRKGMVGP ETGLSAQTQM 300 VTTC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500773.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500773.1 | 0.0 | GATA transcription factor 7 | ||||
TrEMBL | A0A1S2Y7V1 | 0.0 | A0A1S2Y7V1_CICAR; GATA transcription factor | ||||
STRING | XP_004500773.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 6e-44 | GATA transcription factor 5 |