PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 246aa MW: 28595.8 Da PI: 10.5639 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.2e-13 | 194 | 240 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 +rW++ E+e l av++lG g+W++I +t +Rt+ ++k++w++ XP_004500738.1 194 KRWSELEEETLRTAVRKLGEGNWTAILNTYTfDNRTGVDLKDKWRNM 240 69*******************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.669 | 185 | 245 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-13 | 190 | 241 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-9 | 192 | 243 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.72E-17 | 194 | 242 | No hit | No description |
Pfam | PF00249 | 9.1E-11 | 194 | 240 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-14 | 194 | 240 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDARSSRVEC TIKYLEVETC NPAYRQAVER IWKGRVQKME PSSEREGSFL FSPELKRWKT 60 IIVVSLLNPT YVDMFASITH PRRDALKKLK LYLDEALQNL ALSRNHQTEI QKDNETSLKG 120 KVTTTGIDDA NLTKTVTVYD VCDSSFREPN RAARTHKGGT SNKTRITLIS PKKVKISPLK 180 KYEPKKIFRR RKPKRWSELE EETLRTAVRK LGEGNWTAIL NTYTFDNRTG VDLKDKWRNM 240 ERSGRQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500737.1 | 1e-177 | uncharacterized protein LOC101498622 | ||||
TrEMBL | A0A1S2Y7S5 | 1e-176 | A0A1S2Y7S5_CICAR; uncharacterized protein LOC101498622 | ||||
STRING | XP_004500737.1 | 1e-177 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 1e-09 | TRF-like 5 |