PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 863aa MW: 95914.8 Da PI: 8.7274 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.7 | 3.1e-18 | 771 | 851 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li +r+++ +r++ k ++ lWee+s+ + + g++rsp qCk+ w++l y++ik+g+ +r ++++y++++e XP_004500652.1 771 KWKAEEVKKLIGLRSDLRDRFKVVKGRMILWEEISQSLLADGIRRSPAQCKSLWRSLVLTYEEIKNGKDSR-----KNWQYLEDME 851 7********************************************************************96.....79*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 2.5E-66 | 73 | 323 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 1.18E-72 | 74 | 488 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 1.9E-23 | 86 | 283 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 1.7E-9 | 98 | 233 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 3.4E-8 | 429 | 475 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 7.851 | 764 | 828 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 766 | 827 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 7.24E-17 | 770 | 835 | No hit | No description |
Pfam | PF13837 | 2.3E-14 | 770 | 853 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 863 aa Download sequence Send to blast |
MASLTTSLPL LFHRPKLTTL SVSASALSAS GSDGSNSRAP HKRRRRIEGP RKSMEDSVQR 60 KMEQFYEGTD GPPLRVLPIG GLGEIGMNCM LVGNHDRYIL IDAGIMFPDY DDLGVQKIIP 120 DTTFIRKWSH KIEALVITHG HEDHIGALPW VIPALDSSTP IFASSFTMEL IKKRLKEHGI 180 FLPSRLKIFR TKNKFVAGPF EIEPIRVTHS IPDCCGLVLR CSDGTILHTG DWKIDETPLD 240 GKVFDREGLE ELSKEGVTLM MSDSTNVLSP GRTTSESAVA DALLRHISAS KGRVITTQFA 300 SNLHRIGSVK AAADLTGRKL VFVGMSLRTY LEAAWKDGKA PFDPSTLVKA EDIDAYAPKD 360 LLIVTTGSQA EPRAALNLAS FGSSHAFKLS KEDVVLYSAK VIPGNESRVM EMLNRISEIG 420 STIVMGKNEG LHTSGHAYRG ELEEVLRIVK PQHFLPVHGE YLFLKEHESL GKSTGIRHTA 480 VIKNGEMLGV SHLRNRRVLS NGFISLGKEN LQLKYSDGDK AFGTSNELFI DERLRIALDG 540 IIVISIEIFR PKNLETFAES TLKGKIRITT RCLWLDKGKL LDALYKAAHA ALSSCPVKSP 600 LAHVERTVSE VLRKMVRKYS GKRPEVIAIA IENPGAVLSD EVNKKLSGKS HVGPEISTIR 660 KAVDENRKES QSTTPQIRDD DIDIEGLLPE KDTTASGAEG DLTGSEDTDE FWKPFIASSV 720 EKSIKANNGY VSRKEHKSNL KKDDSEDIEE AKSEEMSNAE PESPKTVRKN KWKAEEVKKL 780 IGLRSDLRDR FKVVKGRMIL WEEISQSLLA DGIRRSPAQC KSLWRSLVLT YEEIKNGKDS 840 RKNWQYLEDM ERILSNDEAP TKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 3e-85 | 74 | 546 | 19 | 480 | RIBONUCLEASE J |
5a0t_B | 3e-85 | 74 | 546 | 19 | 480 | RIBONUCLEASE J |
5a0v_A | 3e-85 | 74 | 546 | 19 | 480 | RIBONUCLEASE J |
5a0v_B | 3e-85 | 74 | 546 | 19 | 480 | RIBONUCLEASE J |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 46 | KRRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500652.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126782 | 1e-139 | AC126782.23 Medicago truncatula clone mth2-14p11, complete sequence. | |||
GenBank | CU012042 | 1e-139 | CU012042.6 M.truncatula DNA sequence from clone MTH2-25G4 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500652.1 | 0.0 | ribonuclease J-like isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A1S2Y7H8 | 0.0 | A0A1S2Y7H8_CICAR; ribonuclease J-like isoform X1 | ||||
STRING | XP_004500652.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5099 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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