PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 325aa MW: 36072.4 Da PI: 7.0068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.6e-21 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g XP_004500614.1 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 186 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.39E-35 | 136 | 196 | No hit | No description |
PROSITE profile | PS51032 | 23.209 | 137 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-39 | 137 | 200 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 137 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-23 | 137 | 194 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-14 | 138 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MATIMDFYNN TQLYSDPFRG ELMEVLEPFI KSSSTNSTPS PSPSSSSSSS SFTPFYTNDC 60 STSMTQNFIG FAQPSSSCSV LGLNHLTPSQ INQIQTQIQH QNFTQQQEQR FSNSLNFLGA 120 KAIPMKHVGN SSKPTKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA 180 AFKLRGDFAR LNFPNLKHTG SCVVGGEFGE YKPLPSSVDA KLQAICEDLA QIQKQGKSEK 240 PTKKKTPSKL ASKPVSTVTI PLEDSVDLKN VSDNCCKVEV SFSSEGSSPL SDLTFGDVGE 300 PQWEGDSDNF NLLKYPSYEI DWDSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-23 | 136 | 194 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500614.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137718 | 5e-42 | BT137718.1 Medicago truncatula clone JCVI-FLMt-16E12 unknown mRNA. | |||
GenBank | CU651566 | 5e-42 | CU651566.9 M.truncatula DNA sequence from clone MTH2-180F23 on chromosome 3, complete sequence. | |||
GenBank | JN595892 | 5e-42 | JN595892.1 Medicago truncatula putative AP2/EREBP transcription factor (WXP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500614.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 3e-92 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1S2Y8P5 | 0.0 | A0A1S2Y8P5_CICAR; ethylene-responsive transcription factor RAP2-4 | ||||
STRING | XP_004500614.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-63 | related to AP2 4 |
Publications ? help Back to Top | |||
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