PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 126aa MW: 14204.3 Da PI: 6.6486 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.1 | 3.6e-44 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++reda+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la XP_004500573.1 8 PCASCKLLRRRCTKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQELPCDQREDAVSSLVYEAHARMRDPVYGCVGAISYLQNQVSELQMQLA 102 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004500573.1 103 VAQAE 107 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.814 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MGGNTNSPCA SCKLLRRRCT KDCIFAPYFP SHDPHKFAIV HKVFGASNVS KMLQELPCDQ 60 REDAVSSLVY EAHARMRDPV YGCVGAISYL QNQVSELQMQ LAVAQAEMLC IQMEHEYDSL 120 SRETIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-48 | 4 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-48 | 4 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500573.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR378662 | 5e-49 | CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500573.1 | 1e-91 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 9e-70 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1S2Y8L6 | 3e-90 | A0A1S2Y8L6_CICAR; LOB domain-containing protein 12-like | ||||
STRING | XP_004500573.1 | 5e-91 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-72 | LBD family protein |
Publications ? help Back to Top | |||
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